Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8098Identified by match to protein family HMM PF03780. (115 aa)    
Predicted Functional Partners:
CUS_8097
DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599.
 
  
 0.985
CUS_4950
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
    0.680
CUS_6453
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
    0.680
CUS_7020
Identified by match to protein family HMM PF06135; Belongs to the UPF0297 family.
  
    0.589
CUS_8099
Hypothetical protein; Identified by glimmer; putative.
       0.530
CUS_5850
Identified by match to protein family HMM PF06153.
  
     0.505
CUS_8093
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
       0.502
CUS_8094
Conserved domain protein.
       0.502
CUS_8095
HD domain protein; Identified by match to protein family HMM PF01966.
       0.502
CUS_8096
Conserved domain protein.
       0.502
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (18%) [HD]