STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8112Heptaprenyl diphosphate synthase component I; Identified by match to protein family HMM PF07456. (161 aa)    
Predicted Functional Partners:
CUS_8111
Identified by match to protein family HMM PF07009.
 
    0.977
CUS_8110
ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.943
CUS_7819
Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.928
CUS_8113
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_8114
Putative HTH-type transcriptional regulator IscR; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
       0.580
CUS_5156
NQR2 and RnfD family protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
     0.520
rnfC
Electron transport complex, RnfABCDGE type, C subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF01512.
 
     0.519
CUS_5587
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.467
CUS_5503
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.461
CUS_7471
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.
  
     0.460
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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