Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pnuCNicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528. (227 aa)    
Predicted Functional Partners:
nadA
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
 
  
 0.791
CUS_6289
Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.
  
  
 0.677
CUS_6076
Putative membrane protein.
  
     0.494
CUS_8114
Putative HTH-type transcriptional regulator IscR; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
       0.487
CUS_7343
Putative ATP synthase F0, A subunit.
  
     0.451
CUS_8116
Putative phenylacetate-coenzyme A ligase.
       0.449
CUS_6734
Putative lipoprotein.
  
     0.429
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (12%) [HD]