STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8126Conserved domain protein; Overlaps another CDS with the same product name. (151 aa)    
Predicted Functional Partners:
CUS_8127
Conserved domain protein; Overlaps another CDS with the same product name.
       0.773
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
       0.693
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.693
CUS_8125
Hypothetical protein; Identified by glimmer; putative.
       0.693
CUS_8122
Hypothetical protein; Identified by glimmer; putative.
       0.674
CUS_8128
Cobalt transport protein; Identified by match to protein family HMM PF02361.
       0.651
ecfA
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.651
CUS_8120
Hypothetical protein.
       0.594
CUS_8121
ATPase, AAA family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.
       0.594
CUS_8130
Fic family protein; Identified by match to protein family HMM PF02661.
       0.406
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.