STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfACobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (287 aa)    
Predicted Functional Partners:
CUS_8128
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 0.999
CUS_7319
Conserved domain protein; Overlaps another CDS with the same product name.
  
 0.983
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
 0.978
CUS_7892
Identified by match to protein family HMM PF02632.
 
 
 0.963
CUS_7505
Identified by match to protein family HMM PF02632.
 
 
 0.961
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
 0.954
CUS_6813
Putative dipeptide ABC transporter, ATP-binding protein DppD; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
 
    
0.904
CUS_7674
Hypothetical protein.
 
 
 
 0.895
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.895
CUS_7246
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 
0.892
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.