STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumA23S rRNA (Uracil-5-)-methyltransferase rumA; Identified by similarity to SP:P55135; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (417 aa)    
Predicted Functional Partners:
SPO0030
Voltage-gated sodium channel; Identified by similarity to GB:CAD24429.1; match to protein family HMM PF00520.
       0.831
SPO0027
ABC transporter, transmembrane ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 0.772
SPO0028
ABC transporter, transmembrane ATP-binding protein; Identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 0.772
hslO
Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
 
     0.732
SPO0031
Identified by match to protein family HMM PF03734.
       0.730
SPO0026
Identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.716
SPO3376
Ribosomal RNA small subunit methyltransferase B, putative; Identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
  
 0.512
SPO2037
Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
  
 0.505
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.503
putA
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.486
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.