Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rumA23S rRNA (Uracil-5-)-methyltransferase rumA; Identified by similarity to SP:P55135; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (417 aa)    
Predicted Functional Partners:
SPO0030
Voltage-gated sodium channel; Identified by similarity to GB:CAD24429.1; match to protein family HMM PF00520.
       0.803
SPO0027
ABC transporter, transmembrane ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.758
SPO0028
ABC transporter, transmembrane ATP-binding protein; Identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.758
hslO
Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
 
     0.688
SPO0031
Identified by match to protein family HMM PF03734.
       0.686
SPO0026
Identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.663
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.536
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
  
 0.481
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.480
SPO3376
Ribosomal RNA small subunit methyltransferase B, putative; Identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.470
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.