STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0040ABC transporter, permease protein. (273 aa)    
Predicted Functional Partners:
kpsT
Capsular polysaccharide export ATP-binding protein; Identified by similarity to SP:P10640; match to protein family HMM PF00005.
 
 
 0.995
kpsE
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.
 
  
 0.975
kpsC
Capsular polysaccharide export protein KpsC; Identified by similarity to SP:P42217; match to protein family HMM PF05159.
 
  
 0.966
SPO1756
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.964
SPO0037
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
  
 0.908
SPO0041
Hypothetical protein; Identified by similarity to PIR:E82361.
 
     0.881
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
  
 0.874
SPO0035
Identified by match to protein family HMM PF02485.
 
     0.863
SPO0034
Hypothetical protein; Identified by similarity to GB:AAM48703.1.
 
     0.844
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
 
   
 0.824
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.