Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0065Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein. (273 aa)    
Predicted Functional Partners:
pip
Proline iminopeptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.
       0.773
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.629
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.553
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
       0.552
SPO2996
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.530
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.527
SPO2997
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
 
 
 0.526
SPO1646
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.519
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.513
SPO0062
Hypothetical protein; Identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296.
 
     0.510
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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