STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0068Transcriptional regulator, putative. (146 aa)    
Predicted Functional Partners:
SPO0069
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
  
 0.923
SPO0070
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
     
 0.799
SPO0071
Competence protein F, putative; Identified by similarity to GB:AAK22815.1.
  
    0.630
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
   
 0.544
SPO3129
Hypothetical protein; Identified by similarity to GB:AAK22332.1.
  
     0.507
SPO0072
Hypothetical protein; Identified by similarity to GB:CAE26039.1.
       0.492
SPO0398
Hypothetical protein; Identified by similarity to GB:BAC45936.1.
  
     0.479
SPO0665
SlyX protein, putative; Identified by similarity to SP:Q89SJ8.
  
     0.478
SPO3114
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.450
SPO3482
Trypsin domain protein; Identified by match to protein family HMM PF00089.
  
    0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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