STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0075ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; Identified by match to protein family HMM PF03734. (208 aa)    
Predicted Functional Partners:
SPO0076
Lipoprotein, putative.
 
     0.811
SPO0031
Identified by match to protein family HMM PF03734.
 
  
 0.771
mepA
Murein endopeptidase; Identified by similarity to SP:P14007.
  
     0.624
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.
 
  
 0.610
pbpA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
     
 0.532
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.500
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.491
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
    0.419
SPO1929
Peptidoglycan binding protein, putative; Identified by match to protein family HMM PF01471.
 
  
 0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.