STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0086Lipoprotein, putative; Identified by similarity to GB:CAC41759.1. (420 aa)    
Predicted Functional Partners:
SPO0088
Hypothetical protein; Identified by similarity to GB:BAB51963.1.
    0.990
SPO0089
Hypothetical protein; Identified by similarity to GB:CAE32220.1.
 
  
 0.975
SPO0090
Hypothetical protein; Identified by similarity to GB:CAE37570.1.
 
    0.956
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
 
    0.845
SPO0087
Hypothetical protein; Identified by Glimmer2; putative.
       0.690
SPO2058
Hypothetical protein; Identified by similarity to GB:BAC89701.1.
   
    0.657
SPO0790
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.608
SPO0085
Hypothetical protein; Identified by similarity to GB:CAE29577.1.
       0.509
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.