STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0100Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (315 aa)    
Predicted Functional Partners:
SPO0101
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
 
 0.990
SPO1545
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
  
 0.977
SPO0099
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.965
SPO2833
Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.875
SPO0098
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 0.874
SPO1212
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
  
 0.845
naaB-2
N-acetyltaurine ABC transporter, permease protein; Identified by similarity to SP:P42063; PMID: 21757489.
  
 0.834
SPO2816
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
  
 0.825
SPO1645
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
  
 0.797
naaC
N-acetyltaurine ABC transporter, ATP-binding protein; Identified by similarity to SP:P26905; PMID: 21757489; Belongs to the ABC transporter superfamily.
 
 0.714
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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