STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0105Identified by match to protein family HMM PF01360. (419 aa)    
Predicted Functional Partners:
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
   
    0.613
SPO0106
Hypothetical protein; Identified by similarity to SP:Q9A321; match to protein family HMM PF03883; Belongs to the UPF0246 family.
       0.592
recQ
ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.
       0.516
SPO3705
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; Identified by similarity to GB:AAP25826.1; match to protein family HMM PF01094.
  
    0.447
SPO1490
Regulatory protein, putative; Identified by similarity to GB:BAA11039.1.
  
    0.446
SPO3688
Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903.
 
   
 0.443
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
   
 0.419
SPO1471
Identified by match to protein family HMM PF00857.
 
  
 0.402
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
  
 
0.402
gtdA-1
Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1.
 
  
 0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.