STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0108Transposase, truncation; Identified by similarity to GB:AAR33383.1. (90 aa)    
Predicted Functional Partners:
SPO0628
Transposase, degenerate.
  
     0.656
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
     
 0.465
SPO0109
Membrane protein, putative; Identified by match to protein family HMM PF01061.
       0.452
SPO0111
Hypothetical protein; Identified by similarity to PIR:H82993.
       0.452
SPO0622
ISSpo1, transposase.
 
  
 0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.