STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0125Hypothetical protein; Identified by similarity to PIR:F98281. (294 aa)    
Predicted Functional Partners:
SPO0123
Membrane protein, putative; Identified by match to protein family HMM PF07690.
       0.836
mepA
Murein endopeptidase; Identified by similarity to SP:P14007.
       0.836
SPO0126
Membrane protein, putative; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.829
SPO0122
Identified by match to protein family HMM PF02325.
       0.639
SPO0718
Hypothetical protein; Identified by similarity to GB:AAK08138.1.
  
     0.609
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
  
     0.483
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.479
SPO3263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.473
SPO0127
peptidyl-tRNA hydrolase domain protein; Identified by similarity to GB:AAM35138.1; match to protein family HMM PF00472.
       0.460
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.