STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0134Hypothetical protein; Identified by similarity to GB:BAB50328.1. (188 aa)    
Predicted Functional Partners:
SPO0133
PAN domain protein; Identified by match to protein family HMM PF00024; match to protein family HMM PF01835; match to protein family HMM PF07703.
       0.778
pbpC
Penicillin-binding protein 1C; Identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02073.
       0.778
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
       0.532
SPO2648
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.461
SPO2063
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.443
SPO2022
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.432
SPO2373
Hypothetical protein; Identified by similarity to PIR:B98206; match to protein family HMM PF00903.
 
     0.407
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.