STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0137Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226. (920 aa)    
Predicted Functional Partners:
SPO0138
Hypothetical protein; Identified by similarity to GB:AAN30463.1.
 
    0.964
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
 
     0.961
SPO0139
ATPase, MoxR family.
 
     0.925
SPO0140
Hypothetical protein; Identified by similarity to PIR:E83277; match to protein family HMM PF06938.
 
     0.807
SPO0335
Hypothetical protein.
  
    0.780
SPO3193
Hypothetical protein; Identified by similarity to GB:BAB48214.1.
  
     0.688
SPO2129
Hypothetical protein; Identified by similarity to PIR:F87495.
 
  
 0.581
SPO2959
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.580
SPO1416
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.556
SPO0320
Hypothetical protein; Identified by similarity to GB:CAC45419.1.
  
     0.541
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.