STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0138Hypothetical protein; Identified by similarity to GB:AAN30463.1. (291 aa)    
Predicted Functional Partners:
SPO0139
ATPase, MoxR family.
  
 0.982
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
 
    0.964
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
 
     0.961
SPO0335
Hypothetical protein.
  
   
 0.779
SPO0140
Hypothetical protein; Identified by similarity to PIR:E83277; match to protein family HMM PF06938.
 
     0.776
nnrD
YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
     
 0.486
SPO1416
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.449
SPO3193
Hypothetical protein; Identified by similarity to GB:BAB48214.1.
  
     0.419
SPO2227
Hypothetical protein; Identified by similarity to GB:BAC49590.1.
  
     0.415
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.414
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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