STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0140Hypothetical protein; Identified by similarity to PIR:E83277; match to protein family HMM PF06938. (193 aa)    
Predicted Functional Partners:
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
 
     0.834
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
 
     0.815
SPO0138
Hypothetical protein; Identified by similarity to GB:AAN30463.1.
 
     0.808
SPO0139
ATPase, MoxR family.
       0.736
SPO0025
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
      0.632
SPO2563
Hydroxypyruvate isomerase, putative; Identified by similarity to SP:P30147; Belongs to the hyi family.
 
     0.521
SPO0316
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
 
     0.492
SPO3155
Hypothetical protein; Identified by similarity to SP:O68068; match to protein family HMM PF05779; Belongs to the UPF0260 family.
  
     0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.