STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0166N-methylproline demethylase, putative; Identified by similarity to SP:O87278; match to protein family HMM PF00724. (681 aa)    
Predicted Functional Partners:
SPO0164
Oxidoreductase, FMN-binding/pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724.
 
 
0.882
SPO0168
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
  
 0.847
SPO0165
Pyrroline-5-carboxylate reductase, putative.
 
  
 0.839
SPO0167
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
 
     0.814
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975.
  
 
 0.703
soxE
Diheme cytochrome c SoxE; Identified by match to protein family HMM PF00034.
   
 
 0.579
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.574
SPO0566
Transcriptional regulator, TetR family.
 
  
 0.570
paaK
Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160.
  
  
 0.558
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974.
  
 
 0.554
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.