STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0169Transglycosylase, Slt family; Identified by match to protein family HMM PF01464. (232 aa)    
Predicted Functional Partners:
fliR
Flagellar biosynthetic protein FliR; Identified by similarity to SP:P35537; similarity to SP:Q45975; match to protein family HMM PF01311.
 
    0.879
flhB
Flagellar biosynthetic protein FlhB; Identified by similarity to SP:P35538; match to protein family HMM PF01312.
  
  
 0.868
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
    0.859
SPO0173
Hypothetical protein; Identified by Glimmer2; putative.
       0.771
SPO0168
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.605
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P75939; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
  
 
 0.559
flgB
Flagellar basal-body rod protein; Identified by similarity to SP:P24500; similarity to SP:P75934.
 
  
 0.556
fliE
Flagellar hook-basal body complex protein FliE, putative; Identified by similarity to SP:P24502.
  
  
 0.527
fliI
H+-transporting two-sector ATPase, flagellum-specific; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026.
  
  
 0.516
SPO0192
Flagellar hook protein FlgE, putative; Identified by similarity to SP:O07884; match to protein family HMM PF00460; match to protein family HMM PF06429.
 
  
 0.488
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.