STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0174Hypothetical protein; Identified by Glimmer2; putative. (178 aa)    
Predicted Functional Partners:
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
    0.999
fliQ
Flagellar biosynthetic protein FliQ; Identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402.
 
  
 0.999
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P24501; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
 
    0.999
SPO0192
Flagellar hook protein FlgE, putative; Identified by similarity to SP:O07884; match to protein family HMM PF00460; match to protein family HMM PF06429.
  
    0.999
fliN
Flagellar motor switch protein FliN; Identified by similarity to SP:Q03593; match to protein family HMM PF01052.
 
    0.999
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
    0.999
SPO0201
Hypothetical protein; Identified by similarity to GB:AAF27716.1.
 
    0.999
SPO0202
Hypothetical protein; Identified by similarity to PIR:E83956.
 
  
 0.999
motA
Chemotaxis protein MotA; Identified by similarity to SP:P09348; match to protein family HMM PF01618.
 
  
 0.999
fliG
Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706.
   
    0.999
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.