STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0185Membrane protein, putative. (208 aa)    
Predicted Functional Partners:
SPO0184
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.969
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
 
  
 0.945
SPO1074
Hypothetical protein; Identified by Glimmer2; putative.
     
  0.900
SPO0188
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.852
SPO0189
Hypothetical protein; Identified by similarity to GB:AAM42620.1.
 
     0.809
SPO0187
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.757
SPO0771
Identified by match to protein family HMM PF01970.
  
  
 0.606
SPO1075
Membrane protein, putative; Identified by match to protein family HMM PF01970.
  
  
 0.606
SPO2384
Identified by match to protein family HMM PF01970.
  
  
 0.606
SPO0769
Identified by match to protein family HMM PF03401.
  
  
 0.594
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.