SPO0188 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO0188

Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (461 aa)

Predicted Functional Partners:

SPO0187

0.996

SPO0189

0.995

SPO0185

0.851

SPO0186

0.842

SPO3038

0.779

SPO0132

0.777

pdhB

0.736

SPO0585

0.711

phoB

0.693

petR

0.654

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0132	SPO0187	SPO0132	SPO0187	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.722
SPO0132	SPO0188	SPO0132	SPO0188	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.777
SPO0132	SPO0585	SPO0132	SPO0585	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Dehydrogenase/transketolase family protein.	0.697
SPO0132	SPO3038	SPO0132	SPO3038	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.968
SPO0132	pdhB	SPO0132	SPO2241	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.765
SPO0132	petR	SPO0132	SPO0251	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	DNA-binding response regulator PetR; Identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.733
SPO0132	phoB	SPO0132	SPO1953	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Phosphate regulon transcriptional regulatory protein PhoB; Identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.814
SPO0185	SPO0186	SPO0185	SPO0186	Membrane protein, putative.	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	0.945
SPO0185	SPO0187	SPO0185	SPO0187	Membrane protein, putative.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.757
SPO0185	SPO0188	SPO0185	SPO0188	Membrane protein, putative.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.851
SPO0185	SPO0189	SPO0185	SPO0189	Membrane protein, putative.	Hypothetical protein; Identified by similarity to GB:AAM42620.1.	0.806
SPO0186	SPO0185	SPO0186	SPO0185	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	Membrane protein, putative.	0.945
SPO0186	SPO0187	SPO0186	SPO0187	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.685
SPO0186	SPO0188	SPO0186	SPO0188	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.842
SPO0186	SPO0189	SPO0186	SPO0189	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	Hypothetical protein; Identified by similarity to GB:AAM42620.1.	0.753
SPO0187	SPO0132	SPO0187	SPO0132	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.722
SPO0187	SPO0185	SPO0187	SPO0185	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Membrane protein, putative.	0.757
SPO0187	SPO0186	SPO0187	SPO0186	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.	0.685
SPO0187	SPO0188	SPO0187	SPO0188	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.996
SPO0187	SPO0189	SPO0187	SPO0189	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Hypothetical protein; Identified by similarity to GB:AAM42620.1.	0.932

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About