STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0189Hypothetical protein; Identified by similarity to GB:AAM42620.1. (341 aa)    
Predicted Functional Partners:
SPO0188
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
     0.995
SPO3288
Ferric iron ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.959
SPO0187
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   
 0.932
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
  
  
 0.915
SPO2689
Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 
 0.837
SPO0185
Membrane protein, putative.
 
     0.806
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
 
     0.753
SPO0190
Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199.
       0.554
motB
Chemotaxis protein MotB; Identified by similarity to SP:P09349.
  
   0.548
SPO0184
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
     0.481
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.