Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0205MmgE/PrpD family protein; Identified by similarity to GB:AAO56546.1; match to protein family HMM PF03972. (460 aa)    
Predicted Functional Partners:
gltA
Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
  
  
 0.651
SPO0206
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.579
SPO1598
Hypothetical protein; Identified by similarity to GB:CAE31122.1.
  
  
 0.527
SPO1085
Hypothetical protein; Identified by similarity to GB:CAE29266.1.
  
  
 0.456
SPO1470
Isocitrate lyase family protein; Identified by similarity to SP:Q56062.
  
  
 0.456
SPO3312
Hypothetical protein; Identified by similarity to GB:CAC41875.1.
  
  
 0.456
citE
Citrate lyase, beta subunit; Identified by similarity to SP:P77770; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.450
SPO1498
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.431
SPO1738
Dehalogenase, putative; Identified by similarity to GB:AAO60101.1; match to protein family HMM PF00037; match to protein family HMM PF03860.
  
     0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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