Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0213Hypothetical protein; Identified by similarity to GB:AAM40439.1. (357 aa)    
Predicted Functional Partners:
SPO0214
Membrane protein, putative.
       0.836
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.529
leuD-1
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.486
SPO1885
Membrane protein, putative.
  
  
 0.485
SPO0373
Helicase, ATP-dependent, putative.
 
     0.424
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
  
     0.421
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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