Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0226Cytochrome P450 family protein. (412 aa)    
Predicted Functional Partners:
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.912
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
  
 
 0.819
SPO0225
Transcriptional regulator, putative.
 
     0.648
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
 
 0.645
SPO1452
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 0.634
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.633
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.615
SPO1581
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 0.584
SPO0766
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.
 
 0.569
SPO0212
Hypothetical protein; Identified by similarity to PIR:G97622.
 
 
 0.519
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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