Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0232Quinone oxidoreductase, putative; Identified by similarity to SP:P40783; match to protein family HMM PF00107. (327 aa)    
Predicted Functional Partners:
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 
 0.963
SPO1932
Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
  
 0.904
fabF
3-oxoacyl-(acyl carrier protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.904
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128.
 
    
 0.802
SPO0231
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
    
0.657
SPO0233
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
    0.614
SPO1181
Penicillin-binding protein; Identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717.
 
      0.508
aasadh
Alpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.472
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
  
   0.448
lysdh
Lysine dehydrogenase; Identified by similarity to GB:BAB51119.1.
       0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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