STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0233Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199. (142 aa)    
Predicted Functional Partners:
putR
Proline dehydrogenase transcriptional activator; Identified by similarity to SP:Q52710; match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.755
SPO0119
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.750
SPO2624
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.746
SPO1425
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.742
SPO0569
Transcriptional regulator, AsnC family.
  
     0.741
SPO1368
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.730
SPO2631
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.722
SPO0223
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.704
lysdh
Lysine dehydrogenase; Identified by similarity to GB:BAB51119.1.
 
     0.655
SPO3179
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.629
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.