STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBSN-glycerol-3-phosphate ABC transporter, periplasmic SN-glycerol-3-phosphate-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547. (461 aa)    
Predicted Functional Partners:
ugpE
SN-glycerol-3-phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.995
ugpA
SN-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
 
 0.995
upgC
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 0.987
SPO0236
Glycerophosphoryl diester phosphodiesterase, putative; Identified by similarity to SP:P37965; match to protein family HMM PF03009.
 
  
 0.759
SPO1821
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.648
SPO0241
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.633
SPO1822
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.619
SPO0612
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon.
  
 
 0.527
SPO3786
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.527
SPO1837
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.523
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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