STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0250Identified by match to protein family HMM PF00850. (308 aa)    
Predicted Functional Partners:
SPO3819
ATPase, AFG1 family; Identified by match to protein family HMM PF03969.
      0.795
ispA
Farnesyl diphosphate synthase; Identified by similarity to GB:BAA96458.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
       0.738
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.738
petP
Transcriptional regulator PetP; Identified by similarity to SP:P31078; match to protein family HMM PF01047.
       0.713
petR
DNA-binding response regulator PetR; Identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.697
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.666
SPO3597
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01593.
   
 0.534
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.530
SPO2324
Hypothetical protein; Identified by similarity to GB:BAB50081.1.
  
 0.496
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.487
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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