STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ohrOrganic hydroperoxide resistance protein; Identified by similarity to GB:AAC38562.1; match to protein family HMM PF02566. (146 aa)    
Predicted Functional Partners:
SPO0255
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
 0.970
SPO3802
Hypothetical protein; Identified by similarity to GB:BAC50760.1.
   
    0.590
SPO2184
Hypothetical protein; Identified by similarity to SP:P55495.
  
  
 0.577
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.526
SPO3742
Glutathione peroxidase famly protein; Identified by match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
  
  
 0.489
SPO2490
Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355.
   
  
 0.480
SPO3013
NADP-dependent oxidoreductase, L4bD family; Identified by match to protein family HMM PF00107.
  
 0.458
SPO1084
Hypothetical protein; Identified by similarity to GB:CAC41724.1.
  
  
 0.449
SPO1192
Hypothetical protein; Identified by similarity to GB:AAK24936.1.
  
  
 0.449
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.431
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.