Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0256Copper-binding protein, plastocyanin/azurin family; Identified by match to protein family HMM PF00127. (109 aa)    
Predicted Functional Partners:
SPO0257
Hypothetical protein; Identified by similarity to PIR:A96030.
 
     0.929
SPO0692
Multicopper oxidase; Identified by similarity to GB:AAD24211.1.
 
 
 
 0.622
SPO1361
Multicopper oxidase domain protein; Identified by match to protein family HMM PF00394.
   
 
 0.563
SPO3671
Muticopper oxidase domain protein; Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409.
   
 
 0.563
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.556
SPO0258
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
       0.529
SPO0259
Membrane protein, putative; Identified by similarity to GB:CAE32384.1.
       0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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