Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0258Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (326 aa)    
Predicted Functional Partners:
SPO0257
Hypothetical protein; Identified by similarity to PIR:A96030.
 
     0.695
SPO0259
Membrane protein, putative; Identified by similarity to GB:CAE32384.1.
       0.576
SPO3150
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
 
 0.544
SPO0256
Copper-binding protein, plastocyanin/azurin family; Identified by match to protein family HMM PF00127.
       0.529
SPO1704
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
 
 0.510
SPO2216
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
    0.494
SPO3024
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00211; match to protein family HMM PF00561.
 
 
  
 0.480
SPO1434
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
 
 0.457
SPO2566
Identified by match to protein family HMM PF00903.
 
     0.453
SPO3397
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
 
 0.447
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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