Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0260Alkaline phosphatase, putative; Identified by similarity to SP:P42251; match to protein family HMM PF00245; match to protein family HMM TIGR01409. (522 aa)    
Predicted Functional Partners:
SPO1362
Dihydroneopterin aldolase, putative; Identified by match to protein family HMM TIGR00526.
     
 0.914
SPO0803
NUDIX domain protein; Identified by match to protein family HMM PF00293.
     
  0.900
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
SPO3903
6-pyruvoyl tetrahydropterin synthase, putative; Identified by match to protein family HMM PF01242.
    
  0.900
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
   
  
 0.554
SPO0259
Membrane protein, putative; Identified by similarity to GB:CAE32384.1.
       0.459
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.414
SPO1860
Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409.
  
  
 0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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