STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0286Hypothetical protein; Identified by Glimmer2; putative. (174 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.861
SPO0284
Dihydroorotase, multifunctional complex type; Identified by similarity to SP:P46538; match to protein family HMM PF01979; match to protein family HMM TIGR00857.
       0.857
plsY
Putative protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.852
SPO0285
Hypothetical protein; Identified by Glimmer2; putative.
       0.811
SPO0282
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO2289
Hypothetical protein; Identified by similarity to PIR:E82389.
  
     0.653
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.642
SPO1427
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.610
SPO0725
Bacterial SH3 domain family protein.
  
     0.605
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.584
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.