STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0300Hypothetical protein; Identified by Glimmer2; putative. (151 aa)    
Predicted Functional Partners:
SPO0299
Identified by match to protein family HMM PF00753.
       0.836
SPO0298
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
       0.773
SPO0304
Lipoprotein, putative.
 
     0.632
SPO0301
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
 
     0.630
SPO0297
Sua5/YciO/YrdC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.622
SPO0302
Hypothetical protein; Identified by similarity to GB:CAE78911.1.
       0.570
SPO1198
Hypothetical protein; Identified by similarity to GB:BAC67841.1.
  
     0.496
SPO3324
Hypothetical protein; Identified by similarity to GB:CAC46975.1.
  
     0.483
SPO2962
Hypothetical protein; Identified by similarity to GB:AAO55291.1.
  
     0.469
SPO3322
Hypothetical protein; Identified by similarity to GB:CAC46971.1.
  
     0.454
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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