STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0301Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009. (614 aa)    
Predicted Functional Partners:
SPO0236
Glycerophosphoryl diester phosphodiesterase, putative; Identified by similarity to SP:P37965; match to protein family HMM PF03009.
  
  
 
0.923
SPO1414
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
  
 0.922
SPO0302
Hypothetical protein; Identified by similarity to GB:CAE78911.1.
     
 0.782
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Identified by similarity to SP:P13035; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.670
SPO1871
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
 
     0.633
SPO0300
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.630
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.615
SPO0299
Identified by match to protein family HMM PF00753.
  
    0.590
SPO0303
Cytochrome c oxidase, subunit IV domain protein.
       0.586
SPO0298
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
     
 0.576
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.