Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0311Hypothetical protein; Identified by Glimmer2; putative. (335 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.822
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.746
SPO2738
Lipoprotein, putative.
  
     0.740
SPO1032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.716
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.710
SPO3372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.710
SPO3094
Lipoprotein, putative.
  
     0.709
SPO3758
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.708
SPO0951
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.706
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.706
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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