STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0320Hypothetical protein; Identified by similarity to GB:CAC45419.1. (71 aa)    
Predicted Functional Partners:
SPO0321
Hypothetical protein; Identified by similarity to GB:CAD24416.1; Belongs to the methyltransferase superfamily.
       0.861
SPO0322
Hypothetical protein; Identified by similarity to PIR:AE3289; match to protein family HMM PF04325.
 
     0.779
ddsA
Decaprenyl diphosphate synthase; Identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
       0.737
SPO0335
Hypothetical protein.
 
     0.622
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
  
     0.541
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.414
SPO3193
Hypothetical protein; Identified by similarity to GB:BAB48214.1.
  
     0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.