STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0321Hypothetical protein; Identified by similarity to GB:CAD24416.1; Belongs to the methyltransferase superfamily. (257 aa)    
Predicted Functional Partners:
SPO0320
Hypothetical protein; Identified by similarity to GB:CAC45419.1.
       0.836
ddsA
Decaprenyl diphosphate synthase; Identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
       0.695
SPO0322
Hypothetical protein; Identified by similarity to PIR:AE3289; match to protein family HMM PF04325.
       0.662
pepF
Identified by match to protein family HMM PF01432.
 
     0.461
SPO2452
DNA polymerase III, chi subunit, putative; Identified by match to protein family HMM PF04364.
  
     0.457
SPO0062
Hypothetical protein; Identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296.
 
    0.417
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.