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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0322Hypothetical protein; Identified by similarity to PIR:AE3289; match to protein family HMM PF04325. (54 aa)    
Predicted Functional Partners:
SPO0320
Hypothetical protein; Identified by similarity to GB:CAC45419.1.
 
     0.779
SPO0321
Hypothetical protein; Identified by similarity to GB:CAD24416.1; Belongs to the methyltransferase superfamily.
       0.709
SPO2848
Hypothetical protein; Identified by similarity to SP:P51702.
  
     0.700
ddsA
Decaprenyl diphosphate synthase; Identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
       0.628
ntrY
Nitrogen regulation protein ntrY; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
     0.503
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
pcs
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.479
SPO0425
MORN repeat protein; Identified by match to protein family HMM PF02493.
  
     0.473
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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