STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0328Hypothetical protein; Identified by similarity to GB:BAB48523.1. (310 aa)    
Predicted Functional Partners:
SPO0329
Hypothetical protein; Identified by Glimmer2; putative.
       0.814
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
   
 
 0.667
SPO0327
EAL domain protein; Identified by match to protein family HMM PF00563.
  
    0.534
SPO1340
Membrane protein, putative.
 
     0.497
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
   
 
 0.438
SPO2129
Hypothetical protein; Identified by similarity to PIR:F87495.
  
 
 0.427
SPO1057
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199.
  
     0.417
idi
Isopentyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.