STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpACytochrome c peroxidase; Identified by similarity to SP:P14532; match to protein family HMM PF03150. (349 aa)    
Predicted Functional Partners:
SPO1643
Selenium-binding protein, putative; Identified by match to protein family HMM PF05694.
  
 
 0.644
SPO2378
Selenium-binding protein, putative; Identified by match to protein family HMM PF05694.
  
 
 0.644
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
  
 
 0.638
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
  
 0.624
ompW
Outer membrane protein OmpW; Identified by similarity to SP:P17266; match to protein family HMM PF03922.
   
  
 0.547
sitA
Manganese ABC transporter, periplasmic protein; Identified by similarity to SP:P96116; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
      
 0.525
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.471
soxE
Diheme cytochrome c SoxE; Identified by match to protein family HMM PF00034.
  
  
 0.470
tolB
TolB, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.466
soxD
Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034.
  
  
 0.463
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.