Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0331Thiol:disulfide interchange protein, putative; Identified by similarity to SP:P43221. (187 aa)    
Predicted Functional Partners:
SPO3383
Thiol-specific antioxidant protein; Identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578.
  
 0.857
SPO2937
Identified by match to protein family HMM PF02630.
 
 
 0.824
senC
Regulatory protein SenC; Identified by similarity to SP:Q52720; match to protein family HMM PF02630.
 
 
 0.798
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.785
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683.
 
  
 0.745
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292.
  
 
 0.719
argH
Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.703
soxV
Sulfur oxidation V protein; Identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683.
 
  
 0.691
SPO0164
Oxidoreductase, FMN-binding/pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724.
  
 0.684
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
  
 
 0.669
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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