Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0336MJ0042 family finger-like domain protein; Identified by match to protein family HMM TIGR02098. (279 aa)    
Predicted Functional Partners:
SPO0338
Cell division permease protein FtsX, putative; Identified by match to protein family HMM PF02687.
 
     0.718
ftsE
Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005.
       0.675
SPO0339
Identified by match to protein family HMM PF01553.
       0.675
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.613
SPO0214
Membrane protein, putative.
  
     0.607
SPO2292
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
     0.561
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.540
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.524
SPO1320
Lipoprotein, putative.
  
     0.513
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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