Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0338Cell division permease protein FtsX, putative; Identified by match to protein family HMM PF02687. (299 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005.
 
 0.998
SPO3811
Hypothetical protein; Identified by similarity to GB:AAK25396.1.
 
 
 
 0.966
SPO0339
Identified by match to protein family HMM PF01553.
       0.836
SPO2588
N-acetylmuramoyl-L-alanine amidase, family 3; Identified by match to protein family HMM PF01520.
 
   
 0.727
SPO0336
MJ0042 family finger-like domain protein; Identified by match to protein family HMM TIGR02098.
 
     0.718
SPO2230
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
  
 0.634
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
  
     0.633
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
 
 
 0.616
SPO2251
Hypothetical protein; Identified by similarity to PIR:F97477.
   
 
 0.559
SPO2729
Hypothetical protein; Identified by similarity to PIR:F97477.
   
 
 0.559
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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