Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO0345 | SPO0346a | SPO0345 | SPO0346a | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | 0.532 |
| SPO0345 | sucC | SPO0345 | SPO0347 | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.689 |
| SPO0345 | sucD | SPO0345 | SPO0346 | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.750 |
| SPO0346a | SPO0345 | SPO0346a | SPO0345 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | 0.532 |
| SPO0346a | SPO0348 | SPO0346a | SPO0348 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | Hypothetical protein; Identified by Glimmer2; putative. | 0.428 |
| SPO0346a | sucC | SPO0346a | SPO0347 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.773 |
| SPO0346a | sucD | SPO0346a | SPO0346 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.658 |
| SPO0348 | SPO0346a | SPO0348 | SPO0346a | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | 0.428 |
| SPO0348 | sucC | SPO0348 | SPO0347 | Hypothetical protein; Identified by Glimmer2; putative. | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.441 |
| sucC | SPO0345 | SPO0347 | SPO0345 | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | 0.689 |
| sucC | SPO0346a | SPO0347 | SPO0346a | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | 0.773 |
| sucC | SPO0348 | SPO0347 | SPO0348 | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Hypothetical protein; Identified by Glimmer2; putative. | 0.441 |
| sucC | sucD | SPO0347 | SPO0346 | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.999 |
| sucD | SPO0345 | SPO0346 | SPO0345 | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656. | 0.750 |
| sucD | SPO0346a | SPO0346 | SPO0346a | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'. | 0.658 |
| sucD | sucC | SPO0346 | SPO0347 | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.999 |