STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0348Hypothetical protein; Identified by Glimmer2; putative. (374 aa)    
Predicted Functional Partners:
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.525
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
     0.501
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
  
     0.453
SPO0040
ABC transporter, permease protein.
 
     0.449
sucC
succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
       0.441
SPO1362
Dihydroneopterin aldolase, putative; Identified by match to protein family HMM TIGR00526.
  
     0.437
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.436
SPO0346a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG006; not identified in other Roseobacter strains'.
       0.428
SPO2027
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.